PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.155340.1
Common NameCsa_1G589140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 382aa    MW: 42089.6 Da    PI: 10.2548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.155340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13263308454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N++f+ L++llP+      +K +K ++L+ + eY++sL
  Cucsa.155340.1 263 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSSL 308
                     58899********************97.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.161259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-12259313No hitNo description
SuperFamilySSF474592.09E-16261329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-17263326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10264308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-14265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00359302328No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
LIPGLAYKHN DPCLKLENSE LQTYASADVQ KQFYLAAGIQ TSIFLGSIHG EIELGFSNVS  60
QVDIEMIISS LVPVDVVAPK VPIMELPQPS TKSKLIPSLS SIPILNPNAL SSSSSSLRSL  120
SMDSPAESPF PTADIPILQS QLQPSSMDSI FAQARNLQFP TPEALDEAMT RTILAVLSSP  180
ACSSSSSVHP PLEKLPPSYR LNVKASAFKK FALVLTPTMR LNRNLSTRQS LLKRSLAFMT  240
NLNLMRVRER MPTTSRPTSS QLHHVISERR RREKLNDSFQ ALKSLLPPGT KKDKGSVLTT  300
TREYMSSLKA QVAELSRRNQ QLEAQLLQTT RGEFSSLTNI VIGVLEFLKQ LNNVRVVSME  360
GNTQLTPSSS SINHLTLRLI IE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267272ERRRRE
2268273RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659993.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A0A0M2020.0A0A0A0M202_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-32bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]